Due to the absence of protease inhibitors, proteolysis may occur during sample preparation. However, in the conditions used to preserve the fungal proteins, we argued that the possible degradation could be
homogenous in all samples and altered slightly the comparative studies. The coefficient of variation of peak profiles on CM10 evaluated on three extracts from simultaneous cultures reached Selleckchem CP673451 an average of 14.2%, lower reproducibility was obtained on NP20 (24.6%) and on H50 (35.4%). Selection of culture parameters: type of fractions, temperature, medium, oxygenation In order to select the culture conditions giving an abundance of fungal components qualitatively detected on chromatographic ProteinChips®, we analyzed the SGC-CBP30 cell line somatic and metabolic protein patterns on NP20
and CM10 ProteinChips® of the three wild-types strains of A. fumigatus (IHEM 9599, IHEM 18963 and IHEM 22145) using eight culture conditions (two temperatures: 25°C and ON-01910 manufacturer 37°C, two oxygenation conditions: stationary and shaken culture, two media: modified Sabouraud and Czapek). Static and shaken fungal cultures were incubated at 37°C for four days and at 25°C for seven days. Somatic and metabolic extracts In the metabolic fractions, the total amount of proteins was at least three times as low as in the somatic fractions. Thus in the secretome (metabolic fractions), specific proteins in low abundance should be undetected in the mixture of the two types of extracts [33].
All fungal extracts from somatic and metabolic fractions obtained from the three wild-types strains of A. fumigatus were classified into Tolmetin two distinct clusters, whatever the growth conditions used (data not shown). As expected, this result highlights differences in protein profiles between these two types of extracts. Temperature, oxygenation and medium We observed great variations of protein patterns under various environmental conditions with the samples from the three wild-types strains of A. fumigatus. The number of significant differences (p < 0.05) in protein profiles according to growth conditions used were important depending on temperature. In our observations, these differences decreased with oxygenation and medium respectively. Temperature The metabolic and somatic fractions from the three strains were separated into two distinct clusters according to growth temperature. Temperature modified the protein expressions in the same way for the three strains examined. Upregulated proteins were 60% higher at 37°C versus 25°C in both metabolic and somatic extracts (Figures 2A and 2B). In our conditions, twenty proteins were shown to be overexpressed at 37°C versus 25°C from the three wild-types strains of A. fumigatus strains. Protein overexpression at 37°C, also documented in our study, has already been pointed out. Some overexpressed proteins have been supposed to be involved in A. fumigatus virulence [34].